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Comissioning as we use it here is the whole process of putting the equipment into service.
Here's what happens:
Installation is checked for safety and compliance with various standards, including those of the manufacturers of the various components.
Equipment is checked for condition , readiness and correctness.
Equipment is safely operated and any fail-safes and safeties double checked, along with change-overs or switchgear.
Comissioning is considered complete when the ultimate operator or owner of the equipment understands the functioning and methods of operating the equipment in question.
Most importantly, at this point the WARRANTY if any is issued